diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index d6c20a6bc..ecdbe9d8a 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -29,6 +29,10 @@ updates:
     mkdocs:
       patterns:
         - "mkdocs*"
+    scipy:
+      patterns:
+        - "scipy"
+        - "scipy-stubs"
 
 - package-ecosystem: "github-actions"
   directory: "/"
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 776c19ecb..d2c4efec7 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -31,7 +31,7 @@ repos:
           - types-requests==2.32.4.20250611
           - types-tabulate==0.9.0.20241207
           - types-python-dateutil==2.9.0.20250708
-          - scipy-stubs==1.16.0.2
+          - scipy-stubs==1.16.1.0
           - SQLAlchemy==2.0.42
         # stages: [push]
 
diff --git a/requirements-dev.txt b/requirements-dev.txt
index 2bcfc7d7f..5b506522b 100644
--- a/requirements-dev.txt
+++ b/requirements-dev.txt
@@ -24,7 +24,7 @@ time-machine==2.16.0
 nbconvert==7.16.6
 
 # mypy types
-scipy-stubs==1.16.0.2  # keep in sync with `scipy` in `requirements-hyperopt.txt`
+scipy-stubs==1.16.1.0  # keep in sync with `scipy` in `requirements-hyperopt.txt`
 types-cachetools==6.1.0.20250717
 types-filelock==3.2.7
 types-requests==2.32.4.20250611