diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 0c0e76879..9e186c7ef 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -31,7 +31,7 @@ repos:
           - types-requests==2.32.4.20250611
           - types-tabulate==0.9.0.20241207
           - types-python-dateutil==2.9.0.20250516
-          - scipy-stubs==1.15.3.0
+          - scipy-stubs==1.16.0.2
           - SQLAlchemy==2.0.41
         # stages: [push]
 
diff --git a/requirements-dev.txt b/requirements-dev.txt
index e945ddd09..e8b49e6b3 100644
--- a/requirements-dev.txt
+++ b/requirements-dev.txt
@@ -24,7 +24,7 @@ time-machine==2.16.0
 nbconvert==7.16.6
 
 # mypy types
-scipy-stubs==1.15.3.0  # keep in sync with `scipy` in `requirements-hyperopt.txt`
+scipy-stubs==1.16.0.2  # keep in sync with `scipy` in `requirements-hyperopt.txt`
 types-cachetools==6.0.0.20250525
 types-filelock==3.2.7
 types-requests==2.32.4.20250611